Tree stem volume estimation from terrestrial lidar point cloud by unwrapping

Estimating the volume of standing trees is a fundamental concern in forestry and is typically accomplished using one or more measurements of stem diameter along with formulae that assume geometric primitives. In contrast, technologies such as terrestrial Light Detection And Ranging (LiDAR) can record very detailed spatial information on the actual surface of an object, such as a tree bole.We present a method using LiDAR that provides accurate volume estimates of tree stems, as well as 2D rasters that display details of stem surfaces, which we call the “unwrapping method.” This method combines the concepts of cylinder fitting, voxelization, and digital elevation models. The method is illustrated and tested using a sample of standing trees, whereby we are able to generate accurate volume estimates from the point cloud, as well as accurate visualization of the scanned stem sections. When compared to volume estimates derived from Huber’s, Smalian’s, and Newton’s formulae, the differences are consistent with previous studies comparing formula-derived volume estimates and water-displacement-derived volume estimates, suggesting the unwrapping method has comparable accuracy to water displacement

Estimating stable isotope turnover rates of epidermal mucus and dorsal muscle for an omnivorous fish using a diet-switch experiment

© 2018, The Author(s). Stable isotope (SI) analysis studies rely on knowledge of isotopic turnover rates and trophic-step discrimination factors. Epidermal mucus (‘mucus’) potentially provides an alternative SI ‘tissue’ to dorsal muscle that can be collected non-invasively and non-destructively. Here, a diet-switch experiment using the omnivorous fish Cyprinus carpio and plant- and fish-based formulated feeds compared SI data between mucus and muscle, including their isotopic discrimination factors and turnover rates (as functions of time T and mass G, at isotopic half-life (50) and equilibrium (95)). Mucus isotope data differed significantly and predictively from muscle data. The fastest δ13C turnover rate was for mucus in fish on the plant-based diet (T50: 17 days, T95: 74 days; G50: 1.08(BM), G95: 1.40(BM)). Muscle turnover rates were longer for the same fish (T50: 44 days, T95: 190 days; G50: 1.13(BM), G95: 1.68(BM)). Longer half-lives resulted in both tissues from the fish-based diet. δ13C discrimination factors varied by diet and tissue (plant-based: 3.11–3.28‰; fishmeal: 1.28–2.13‰). Mucus SI data did not differ between live and frozen fish. These results suggest that mucus SI half-lives provide comparable data to muscle, and can be used as a non-destructive alternative tissue in fish-based SI studies

Species-specific responses of Late Quaternary megafauna to climate and humans

Despite decades of research, the roles of climate and humans in driving the dramatic extinctions of large-bodied mammals during the Late Quaternary remain contentious. We use ancient DNA, species distribution models and the human fossil record to elucidate how climate and humans shaped the demographic history of woolly rhinoceros, woolly mammoth, wild horse, reindeer, bison and musk ox. We show that climate has been a major driver of population change over the past 50,000 years. However, each species responds differently to the effects of climatic shifts, habitat redistribution and human encroachment. Although climate change alone can explain the extinction of some species, such as Eurasian musk ox and woolly rhinoceros, a combination of climatic and anthropogenic effects appears to be responsible for the extinction of others, including Eurasian steppe bison and wild horse. We find no genetic signature or any distinctive range dynamics distinguishing extinct from surviving species, underscoring the challenges associated with predicting future responses of extant mammals to climate and human-mediated habitat change.This paper is in the memory of our friend and colleague Dr. Andrei Sher, who was a major contributor of this study. Dr Sher died unexpectedly, but his major contributions to the field of Quaternary science will be remembered and appreciated for many years to come. We are grateful to Dr. Adrian Lister and Dr. Tony Stuart for guides and discussions. Thanks to Tina B. Brandt, Dr. Bryan Hockett and Alice Telka for laboratory help and samples and to L. Malik R. Thrane for his work on the megafauna locality database. Data taken from the Stage 3 project was partly funded by Grant #F/757/A from the Leverhulme Trust, together with a grant from the McDonald Grants and Awards Fund. We acknowledge the Danish National Research Foundation, the Lundbeck Foundation, the Danish Council for Independent Research and the US National Science Foundation for financial suppor

Abstracts from the 8th International Conference on cGMP Generators, Effectors and Therapeutic Implications

This work was supported by a restricted research grant of Bayer AG

The recurring role of site challenges assumptions about regeneration under selection systems in northern hardwoods

In naturally regenerated managed forests, silvicultural methods leverage timing and intensity of harvesting activities to align with species-specific reproduction mechanisms. With contemporary emphasis on complex stand structure and diverse composition, there is uncertainty in the continued use of timber-oriented management practices in meeting evolving objectives. In the northern hardwood region of North America, selection regeneration systems are assumed to result in homogenization of structure and composition through increasing dominance of Acer saccharum Marsh. Given the coupling of soils and vegetation in northern hardwoods, trends in site conditions that may be more resilient/facilitative to community diversity may be of value to silviculturists. Remote sensing products and inventory records were integrated to assess tree communities across site variables in northern Michigan, USA. Results reveal that composition is stabilized by local landforms and diversity increases with hydrologic catchment area. Time since treatment (0-54 years) appeared negatively correlated with catchment area, suggesting lowlands with high diversity are not managed or harvested infrequently, reflecting equipment access and operational logistics. Broad interpretations of selection regeneration systems may be invalidated by the influence of site conditions not previously accounted for, and results highlight a novel technique to capture the effect of topography on species assemblages.The accepted manuscript in pdf format is listed with the files at the bottom of this page. The presentation of the authors' names and (or) special characters in the title of the manuscript may differ slightly between what is listed on this page and what is listed in the pdf file of the accepted manuscript; that in the pdf file of the accepted manuscript is what was submitted by the author

Representing site productivity in the basal area increment model for FVS-Ontario

The utility of site index as a predictor variable in models for complex, mixed species stands is limited because the site index concept is not well suited for these stand types. Additionally, there is no standard protocol of estimating site index for uneven-aged mixed species stands, which is evident in permanent sample plot (PSP) and co-operative (COOP) data sets available from the Province of Ontario, Canada. Under such circumstances, an alternative to site index in a basal area increment model was explored, using a combination of climate and Forest Ecosystem Classification (FEC) variables from the Ontario boreal region. Among the four candidate climate variables chosen, mean annual temperature (MAT) explained the most variability in basal area increment for the four selected tree species - trembling aspen (Populus tremuloides Michx.), balsam fir (Abies balsamea (L.) Mill.), jack pine (Pinus banksiana Lamb.), and black spruce (Picea mariana (Mill.) B.S.P.). Our results indicated that a combination of the climate variable, MAT, and FEC explained a substantially higher proportion of variation in the basal area increment than site index alone. Thus, climate and FEC variables are superior substitutes in the basal area increment model even when error-free site index values are possible to obtain. © 2009 Elsevier B.V. All rights reserved